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Shopify Checkout Extensibility Migration Guide (2026): Replace checkout.liquid, Scripts, and Legacy Customizations

February 1, 2026
Agam Tech Team

TL;DR

If you’re still relying on checkout.liquid, Shopify Scripts, or brittle theme/app hacks for checkout behavior, 2026 is the year to move to Checkout Extensibility.

The winning approach:

  • UI changes in checkout → Checkout UI extensions (and other extensibility points)
  • Business logic (discount rules, delivery/payment rules, validations) → Shopify Functions
  • Bundles and line-item restructuringCart Transform

If you’re also facing the Shopify Scripts sunset, start here first: Shopify Scripts Sunset Guide: Migrating to Shopify Functions (2026 Deadline)

What is Checkout Extensibility (in plain English)?

Checkout Extensibility is Shopify’s modern way to customize checkout without editing core checkout code directly. Instead of “anything goes” custom checkout code, you implement changes through:

  • Approved extension points (for UI/custom components)
  • Shopify Functions (for backend rules and enforcement)

This is better for performance, stability, and security—and it’s where Shopify’s platform direction is heading.

Why migrate now?

Most checkout migrations fail for one reason: they start too late.

You want enough runway to:

  • Audit the current checkout behavior (including app side-effects)
  • Map each legacy customization to the correct modern replacement
  • Test conversion-critical flows (discounts, shipping, payment, fraud, B2B)

Migration checklist (practical, not theoretical)

1) Audit what your checkout is actually doing today

Create a list of everything that changes checkout behavior:

  • Discount logic (tiered pricing, bundles, VIP offers, exclusions)
  • Shipping logic (free shipping thresholds, hiding methods, renaming methods)
  • Payment logic (hiding COD, reordering gateways, eligibility rules)
  • Validation rules (quantity limits, restricted products, address rules)
  • Tracking + pixels + analytics events

2) Map each item to the right replacement

Use this as your “translation table”:

Legacy patternModern replacement
checkout.liquid UI tweaksCheckout UI extensions / Extensibility points
Script-based discount logicDiscount Function API
Bundles + line-item merges/splitsCart Transform
Hide/reorder delivery optionsDelivery Customization
Hide/reorder payment methodsPayment Customization
Block checkout with rulesValidation Functions

3) Ship in small, reversible steps

The safest rollout looks like:

  • Build the replacement functions/extensions
  • Test in parallel on a staging environment
  • Release in controlled phases (by market, segment, or traffic slice)

Discount Function API (replaces deprecated discount APIs)

If you see older docs referring to “Product Discount API”, “Order Discount API”, or “Shipping Discount API”, be careful: those Function APIs are deprecated and Shopify’s current direction is the unified Discount Function API.

This matters for SEO and implementation: using the correct names prevents confusion and saves engineering time.

Testing plan (what actually breaks conversion)

At minimum, test:

  • Discount stacking/combination behavior
  • Shipping thresholds and edge cases (PO boxes, restricted regions)
  • Payment methods for high-risk/high-value carts
  • Mobile checkout UX (most revenue comes from mobile)
  • Post-purchase email and analytics correctness

For performance-related issues, cross-check your store against Core Web Vitals best practices: Shopify Speed Optimization: Beyond the Basics (2026 Guide)

  • Optimistic (2–6 weeks): a few scripts, limited custom rules, standard markets
  • Typical (6–10 weeks): multiple discount + delivery + payment rules, moderate QA
  • Complex (10–16+ weeks): Shopify Plus store with many edge cases, multiple apps affecting checkout, multiple markets/B2B rules, strict QA requirements

Need help migrating?

At Agam Tech, we help Shopify Plus brands migrate checkout logic safely—so you keep conversion rate while modernizing your checkout stack.

Contact us and we’ll review your current checkout setup and recommend a migration path.

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